![imagej vs fiji imagej vs fiji](https://www.frontiersin.org/files/Articles/521663/fnins-14-00547-HTML/image_m/fnins-14-00547-g001.jpg)
ImageCalculator("AND create", c, b) //overlay DAPI, Olig2 and MBP (other options are: "add","subtract","multiply","divide", "and", "or", "xor", "min", "max", "average", "difference" or "copy") ImageCalculator("AND create", y, a) //overlay DAPI and Olig2 Run("Analyze Particles.", "size=30.00-250.0 show=Outlines clear summarize add")
#Imagej vs fiji windows
SetThreshold(52, 255) //was 150 in Windows Run("Analyze Particles.", "size=30-250 show=Outlines clear summarize add") SetThreshold(25, 255) //was 80 in windows Run("Analyze Particles.", "size=30-350 show=Outlines clear summarize add") -> black: inside threshold, white: outside threshold -> binary image: each pixel can only have one of two values to to indicate whether it is inside the threshold or not! Run("Convert to Mask") //converts everything between 45 and 255 to a mask for further analysis SetThreshold(45, 255) //was 45 in windows
![imagej vs fiji imagej vs fiji](https://live.staticflickr.com/2169/2492280700_216d397472_b.jpg)
I="Drawing of Result of Result of c:1/3 - Well B02, Field #00" // same for DAPI, Olig2, MBP H="Drawing of Result of c:1/3 - Well B02, Field #00" // same for DAPI, Olig2 G="Drawing of c:3/3 - Well B02, Field #00" //same for MBP
#Imagej vs fiji code
My current code is as below: waitForUser("Are you ready to start?")
![imagej vs fiji imagej vs fiji](https://clij.github.io/clij-benchmarking/plotting_jmh/images/imagesize/clij_ij_comparison_AddScalar3D.png)
I have recently been trying to automate my image analysis process on FIJI/ImageJ and I've hit a wall. To start off with, I'm a biochemist with pretty much no experience with any kind of coding so this is probably why struggling.